Search Examples
From EC number to Pfam domain:
Return all the pfam domains associated with EC: 3.4.21.105 = 3.4.21.105 (2 rows)Return all the pfam domains associated with EC: 3.4.21.105 and not in InterPro = 3.4.21.105 no (1 row)
Return all the pfam domains associated with EC: 3.4.21.105 and in InterPro = 3.4.21.105 yes (1 row)
From Pfam domain to EC number:
Return all the EC numbers associated with Pfam domain: 'PF01502'= PF01502 (7 rows)Return all the EC numbers associated with Pfam domain: 'PF01502' and not in InterPro = PF01502 no (6 rows)
Return all the EC numbers associated with Pfam domain: 'PF01502' and in InterPro = PF01502 yes (1 row)
Note that scores below the threshold of 0.05 reveal that these associations have been "rescued" by consistency with 3-digit number associations
PDBs (from SIFTS):
For each row, the last column on the right : "PDBs (from STIFTS)" displays three counts of PDB chains obtained from SIFTS:
Identical: PDB chains having this Pfam domain and identical SIFTS EC annotation
Different: PDB chains having this Pfam domain but different SIFTS EC annotation
Candidate: PDB chains having this Pfam domain and no SIFTS annotation; they are considered as candidates for receiving the EC number recommended by ECDomainMiner.